Datasets

Note: the urls below can be used directly for Juicebox, Juicer, and Command Line Tools.
To download the complete files locally, please use the Box mirror or GEO links:
https://bcm.app.box.com/v/aidenlab



Darrow and Huntley et al. PNAS 2016

GEO link:  https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE71831

RPE1 -DXZ4 Xa

HIC001
http://hicfiles.s3.amazonaws.com/hiseq/rpe1/DarrowHuntley-2015/del-Xa-combined.hic

chrX diploid
http://hicfiles.s3.amazonaws.com/hiseq/rpe1/DarrowHuntley-2015/delXa-chrX-diploid.hic

RPE1 WT

combined
http://hicfiles.s3.amazonaws.com/hiseq/rpe1/DarrowHuntley-2015/WT-combined.hic

chrX diploid
http://hicfiles.s3.amazonaws.com/hiseq/rpe1/DarrowHuntley-2015/WT-chrX-diploid.hic

RPE1 -DXZ4 Xi

combined
http://hicfiles.s3.amazonaws.com/hiseq/rpe1/DarrowHuntley-2015/del-Xi-combined.hic

chrX diploid
http://hicfiles.s3.amazonaws.com/hiseq/rpe1/DarrowHuntley-2015/delXi-chrX-diploid.hic

Patski

combined
http://hicfiles.s3.amazonaws.com/hiseq/patski/DarrowHuntley-2015/combined.hic

paternal
http://hicfiles.s3.amazonaws.com/hiseq/patski/DarrowHuntley-2015/paternal.hic

maternal
http://hicfiles.s3.amazonaws.com/hiseq/patski/DarrowHuntley-2015/maternal.hic

Rhesus macaque

HIC20
http://hicfiles.s3.amazonaws.com/hiseq/rhesus/DarrowHuntley-2015/HIC020.hic

GM12878 COLA

HIC21
http://hicfiles.s3.amazonaws.com/hiseq/gm12878/cola/DarrowHuntley-2015/HIC021.hic

All replicates

HIC002-HIC013
http://hicfiles.s3.amazonaws.com/hiseq/rpe1/DarrowHuntley-2015/HICXXX.hic

HIC014-HIC019
http://hicfiles.s3.amazonaws.com/hiseq/patski/DarrowHuntley-2015/HICXXX.hic

Sanborn and Rao et al. PNAS 2015

GEO link: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE74072

Hap1

Combined MegaMap (799M)
https://hicfiles.s3.amazonaws.com/hiseq/hap1/in-situ/combined.hic

Loops
https://hicfiles.s3.amazonaws.com/hiseq/hap1/in-situ/combined_peaks.txt

Domains
https://hicfiles.s3.amazonaws.com/hiseq/hap1/in-situ/combined_blocks.txt

Rao and Huntley et al. Cell 2014

GEO link: http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63525

GM12878

Primary+Replicate (4.9B)
https://hicfiles.s3.amazonaws.com/hiseq/gm12878/in-situ/combined.hic

Loops
https://hicfiles.s3.amazonaws.com/hiseq/gm12878/in-situ/combined_peaks_with_motifs.txt

Chromosome X Superloops
https://hicfiles.s3.amazonaws.com/hiseq/gm12878/in-situ/combined_chrX_superloop_list.txt

Domains
https://hicfiles.s3.amazonaws.com/hiseq/gm12878/in-situ/combined_blocks.txt

Subcompartments
https://hicfiles.s3.amazonaws.com/hiseq/gm12878/in-situ/combined_subcompartments.bed

Oriented CTCFs
https://hicfiles.s3.amazonaws.com/external/GM12878_CTCF_orientation.bed

Primary (2.6B)
https://hicfiles.s3.amazonaws.com/hiseq/gm12878/in-situ/primary.hic

Loops
https://hicfiles.s3.amazonaws.com/hiseq/gm12878/in-situ/primary_peaks.txt

Domains
https://hicfiles.s3.amazonaws.com/hiseq/gm12878/in-situ/primary_blocks.txt

Replicate (2.3B)
https://hicfiles.s3.amazonaws.com/hiseq/gm12878/in-situ/replicate.hic

Loops
https://hicfiles.s3.amazonaws.com/hiseq/gm12878/in-situ/replicate_peaks.txt

Domains
https://hicfiles.s3.amazonaws.com/hiseq/gm12878/in-situ/replicate_blocks.txt

Maternal
https://hicfiles.s3.amazonaws.com/hiseq/gm12878/in-situ/maternal.hic

Paternal
https://hicfiles.s3.amazonaws.com/hiseq/gm12878/in-situ/paternal.hic

IMR90

Combined MegaMap (1.1B)
https://hicfiles.s3.amazonaws.com/hiseq/imr90/in-situ/combined.hic

Loops
https://hicfiles.s3.amazonaws.com/hiseq/imr90/in-situ/combined_peaks_with_motifs.txt

Domains
https://hicfiles.s3.amazonaws.com/hiseq/imr90/in-situ/combined_blocks.txt

HMEC

Combined MegaMap (395M)
https://hicfiles.s3.amazonaws.com/hiseq/hmec/in-situ/combined.hic

Loops
https://hicfiles.s3.amazonaws.com/hiseq/hmec/in-situ/combined_peaks_with_motifs.txt

Domains
https://hicfiles.s3.amazonaws.com/hiseq/hmec/in-situ/combined_blocks.txt

NHEK

Combined MegaMap (665M)
https://hicfiles.s3.amazonaws.com/hiseq/nhek/in-situ/combined.hic

Loops
https://hicfiles.s3.amazonaws.com/hiseq/nhek/in-situ/combined_peaks_with_motifs.txt

Domains
https://hicfiles.s3.amazonaws.com/hiseq/nhek/in-situ/combined_blocks.txt

K562

Combined MegaMap (932M)
https://hicfiles.s3.amazonaws.com/hiseq/k562/in-situ/combined.hic

Loops
https://hicfiles.s3.amazonaws.com/hiseq/k562/in-situ/combined_peaks_with_motifs.txt

Domains
https://hicfiles.s3.amazonaws.com/hiseq/k562/in-situ/combined_blocks.txt

KBM7

Combined MegaMap (887M)
https://hicfiles.s3.amazonaws.com/hiseq/kbm7/in-situ/combined.hic

Loops
https://hicfiles.s3.amazonaws.com/hiseq/kbm7/in-situ/combined_peaks.txt

Domains
https://hicfiles.s3.amazonaws.com/hiseq/kbm7/in-situ/combined_blocks.txt

HUVEC

Combined MegaMap (460M)
https://hicfiles.s3.amazonaws.com/hiseq/huvec/in-situ/combined.hic

Loops
https://hicfiles.s3.amazonaws.com/hiseq/huvec/in-situ/combined_peaks_with_motifs.txt

Domains
https://hicfiles.s3.amazonaws.com/hiseq/huvec/in-situ/combined_blocks.txt

HeLa

Combined MegaMap (486M)
https://hicfiles.s3.amazonaws.com/hiseq/hela/in-situ/combined.hic

Loops
https://hicfiles.s3.amazonaws.com/hiseq/hela/in-situ/combined_peaks_with_motifs.txt

Domains
https://hicfiles.s3.amazonaws.com/hiseq/hela/in-situ/combined_blocks.txt

Mouse CH12-LX B-lymphoblasts

Combined MegaMap (635M)
https://hicfiles.s3.amazonaws.com/hiseq/ch12-lx-b-lymphoblasts/in-situ/combined.hic

Loops
https://hicfiles.s3.amazonaws.com/hiseq/ch12-lx-b-lymphoblasts/in-situ/combined_peaks_with_motifs.txt

Domains
https://hicfiles.s3.amazonaws.com/hiseq/ch12-lx-b-lymphoblasts/in-situ/combined_blocks.txt