Software

Juicer and Juicebox

Juicer
Juicer is our end-to-end pipeline for converting raw fastq reads into Hi-C maps and loop calls - using only a single command!

Hi-C Map Viewer
Juicebox is our software for visualizing data from Hi-C and other proximity mapping experiments. It allows you to visually navigate the 3D proximity map dataset and explore entire human genomes.

Juicebox VR
Juicebox VR allows you to explore Hi-C data in a virtual landscape! Juicebox VR requires the use of a VR Headset such as Durovis Dive, Google Cardboard, Gear VR, etc.

Google Ngram Viewer

Hi-C Viewer
The Google Ngram Viewer was developed by the Aiden Lab in collaboration with the Google Books Team to examine the frequency of words or phrases in books over time. You'll be searching through over 5.2 million books: ~4% of all books ever published!

Reality Hacker VR

Reality Hacker VR
Reality Hacker VR allows you to view the world as you have never seen it before! Live in a cartoon, simulate and correct color blindness, or flip your world upside-down!

Requires the use of a VR Headset such as Durovis Dive, Google Cardboard, Gear VR, etc.