Publications

Suhas Rao, Su-Chen Huang, Brian Glenn St Hilaire, Jesse M. Engreitz, Elizabeth M. Perez, Kyong-Rim Kieffer-Kwon, Adrian L. Sanborn, Sarah E. Johnstone, Gavin D. Bascom, Ivan D. Bochkov, Xingfan Huang, Muhammad S. Shamim, Jaeweon Shin, Douglass Turner, Ziyi Ye, Arina D. Omer, James T. Robinson, Tamar Schlick, Bradley E. Bernstein, Rafael Casellas, Eric S. Lander, Erez Lieberman Aiden.
Cohesin Loss Eliminates All Loop Domains.
Cell 2017.

Olga Dudchenko, Sanjit S. Batra*, Arina D. Omer*, Sarah K. Nyquist, Marie Hoeger, Neva C. Durand, Muhammad S. Shamim, Ido Machol, Eric S. Lander, Aviva Presser Aiden, Erez Lieberman Aiden.
De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds.
Science 2017.

Douglas H. Phanstiel*, Kevin Van Bortle*, Damek V. Spacek, Gaelen T. Hess, Muhammad Saad Shamim, Ido Machol, Michael I. Love, Erez Lieberman Aiden, Michael C. Bassik, Michael P. Snyder.
Static And Dynamic DNA Loops Form AP-1 Bound Activation Hubs During Macrophage Development.
Biorxiv (Posted May 25, 2017).

Timnit Gebru, Jonathan Krause, Yilun Wang, Duyun Chen, Jia Deng, Erez Lieberman Aiden, Li Fei-Fei.
Using Deep Learning and Google Street View to Estimate the Demographic Makeup of the US.
arXiv (Submitted February 22, 2017).

Kyle P. Eagen, Erez Lieberman Aiden, Roger D. Kornberg.
Polycomb-Mediated Chromatin Loops Revealed by a Sub-Kilobase Resolution Chromatin Interaction Map.
Biorxiv (Posted January 12, 2017).

Christine S. Cheng*, Rachel E. Gate*, Aviva P. Aiden, Atsede Siba, Marcin Tabaka, Dmytro Lituiev, Ido Machol, Meena Subramaniam, Muhammad Shammim, Kendrick L. Hougen, Ivo Wortman, Su-Chen Huang, Neva C. Durand, Ting Feng, Philip L. De Jager, Howard Y. Chang, Erez Lieberman Aiden, Christophe Benoist, Micheal A. Beer, Chun J. Ye, Aviv Regev.
Genetic determinants of chromatin accessibility and gene regulation in T cell activation across human individuals.
Biorxiv (Posted December 2, 2016).

Neva C. Durand*, Muhammad S. Shamim*, Ido Machol, Suhas S.P. Rao, Miriam H. Huntley, Eric S. Lander, Erez Lieberman Aiden.
Juicer provides a one-click system for analyzing loop-resolution Hi-C experiments.
Cell Systems 3(1), 2016.

Neva C. Durand*, James T. Robinson*, Muhammad S. Shamim, Ido Machol, Jill P. Mesirov, Eric S. Lander, and Erez Lieberman Aiden.
Juicebox provides a visualization system for Hi-C contact maps with unlimited zoom.
Cell Systems 3(1), 2016.

Emily M. Darrow*, Miriam H. Huntley*, Olga Dudchenko, Elena K. Stamenova, Neva C. Durand, Zhuo Suna, Su-Chen Huang, Adrian L. Sanborn, Ido Machol, Muhammad Shamim, Andrew P. Seberg, Eric S. Lander, Brian P. Chadwick, and Erez Lieberman Aiden.
Deletion of DXZ4 on the human inactive X chromosome alters higher-order genome architecture.
PNAS 2016.

Adrian L. Sanborn*, Suhas S.P. Rao*, Su-Chen Huang, Neva C. Durand, Miriam H. Huntley, Andrew Jewett, Ivan D. Bochkov, Dharmaraj Chinnappan, Ashok Cutkosky, Jian Li, Kristopher P. Geeting, Andreas Gnirke, Alexandre Melnikov, Doug McKenna, Elena K. Stamenova, Eric S. Lander, Erez Lieberman Aiden.
Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes.
PNAS 2015.

Erez Lieberman Aiden and Rafael Casellas.
Somatic Rearrangement in B Cells: It’s (Mostly) Nuclear Physics.
Cell 162 (2015).

Suhas S.P. Rao*, Miriam H. Huntley*, Neva C. Durand, Elena K. Stamenova, Ivan D. Bochkov, James T. Robinson, Adrian L. Sanborn, Ido Machol, Arina D. Omer, Eric S. Lander, Erez Lieberman Aiden.
A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping.
Cell 159 2015. GScholar Citations: 149.

Jay Shendure, Nevan Krogan, Pardis Sabeti, Kwanghun Chung, Erez Lieberman Aiden, Hana El-Samad.
Guiding Philosophies for Running a Lab.
Cell 158 (2014).

Uri Laserson, Francois Vigneault, Daniel Gadala-Maria, Gur Yaari, Mohamed Uduman, Jason A. Vander Heiden, William Kelton, Sang Taek Jung, Yi Liu, Jonathan Laserson, Raj Chari, Je-Hyuk Lee, Ido Bachelet, Brendan Hickey, Erez Lieberman Aiden, Bozena Hanczaruk, Birgitte B Simen, Michael Egholm, Daphne Koller, George Georgiou, Steven H Kleinstein, George M Church.
High-resolution antibody dynamics of vaccine-induced immune responses.
Proceedings of the National Academy of Sciences 2014. GScholar Citations: 21.

Erez Aiden and Jean-Baptiste Michel.
Uncharted: Big Data as a Lens on Human Culture. Penguin.

Job Dekker, Joanna Wysocka, Iain Mattaj, Erez Lieberman Aiden, Craig Pikaard.
Nuclear biology: what's been most surprising?
Cell 152 (2013).

Jay Shendure and Erez Lieberman Aiden.
The expanding scope of DNA sequencing.
Nature Biotechnology 30 (2012). Cover.

Erez Lieberman Aiden.
Zoom!
Science 334 (2011). Books.

Jean-Baptiste Michel*, Yuan Kui Shen, Aviva Presser Aiden, Adrian Veres, Matthew K. Gray, The Google Books Team, Joseph P. Pickett, Dale Hoiberg, Dan Clancy, Peter Norvig, Jon Orwant, Steven Pinker, Martin A. Nowak, and Erez Lieberman Aiden*.
Quantitative Analysis of Culture Using Millions of Digitized Books.
Science 331 (2011). GScholar Citations: 2251. [Includes citations of Google Ngram Viewer] Cover Article.

Erez Lieberman-Aiden*, Nynke L. van Berkum*, et al.
Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Science 326 (2009). GScholar Citations: 1626. Cover Article.

Erez Lieberman*, Jean-Baptiste Michel*, Joe Jackson, Tina Tang, and Martin Nowak.
Quantifying the Evolutionary Dynamics of Language.
Nature 449 (2007). GScholar Citations: 181. Cover Article.

Tarjei S Mikkelsen, Manching Ku, David B Jaffe, Biju Issac, Erez Lieberman, et al.
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells.
Nature 448 (2007). GScholar Citations: 2653.

Hisashi Ohtsuki, Christoph Hauert, Erez Lieberman, and Martin Nowak.
A Simple Rule for the Evolution of Cooperation on Graphs and Social Networks.
Nature 441 (2006). GScholar Citations: 1122.

Erez Lieberman, Christoph Hauert, and Martin Nowak.
Evolutionary Dynamics on Graphs.
Nature 433 (2005). GScholar Citations: 698.

* contributed equally